Rosaceae Assembly V3 Project Description

Many sequencing projects around the world are depositing ESTs from the genus Rosaceae in the NCBI dbEST database. To reduce redundancy and create longer transcripts we assembled these ESTs using the CAP3 program and annotated them through Blast sequence similarity searches, SSR analysis, SNP mining, and other functional characterization. This is the third version of the Rosaceae unigene. The CAP3 assembly software was used with a stringency of -p 90. For more information on this project please contact the GDR development team.

August 1, 2006: Genbank Rosaceae ESTs Assembled

Processing Summary
Number of ESTs available 364105
Number of ESTs available after filtering 359001
Average Length 581
Number of Contigs (CAP3 Assembly, -p 90 ) 13764
Average Length of Contigs 1023
Number of Singlets 76573
Number of Putative Unigenes (contigs and singlets) 90337