Rosaceae EST Unigene
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Rosaceae EST Unigene V4 Development:
Assemblies of publicly available ESTs are available for the family
Rosaceae
and the genera
Malus,
Prunus,
Fragaria,
Rosa,
Pyrus and
Rubus.
The individual ESTs and the contigs are annotated by putative
function by sequence homology (Swiss-Prot and TrEMBL), tissue, protein
domain (InterProScan), SSR, and SNPs. Unique oligos for the unigene sets are also developed for unigene chip development.
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Rosaceae EST Unigene V3 Development: Assemblies of publicly available ESTs are available for the family Rosaceae and the genera Malus, Prunus, Fragaria,
Rosa and Pyrus.
The individual ESTs and the contigs are annotated by putative
function by sequence homology (Swiss-Prot and TrEMBL), tissue, protein
domain (InterProScan), SSR, and SNPs. Unique oligos for the unigene sets are also developed for unigene chip development.
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SNP Analysis:
The publicly available autoSNP software was used to analyze the most recent versions of the Rosaceae unigene and the individual genera unigenes. A summary of the results and downloadable data can be found
here.
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Search Genbank ESTs:
Search the Genbank
ESTs
and
contigs
by name, assembly, putative function, taxa, tissue, and
sequence features such as SSR and SNPs.
Organism Project EST Number Unigene Number Contig Number Singlet Number Rosaceae Rosaceae Assembly Version 4 397223 95917 13549 82368 Fragaria Fragaria Assembly Version 4 49132 13896 5582 8314 Malus Malus Assembly Version 4 249195 76484 23284 53200 Prunus Prunus Assembly Version 4 89166 24307 9179 15128 Pyrus Pyrus Assembly Version 4 335 275 35 240 Rosa Rosa Assembly Version 4 9077 4834 1228 3606 Rubus Rubus Assembly Version 4 318 160 40 120
Organism Project EST Number Unigene Number Contig Number Singlet Number Rosaceae Rosaceae Assembly Version 3 359001 90337 13764 76573 Fragaria Fragaria Assembly Version 3 18729 10012 2939 7073 Malus Malus Assembly Version 3 250907 82850 23868 58982 Prunus Prunus Assembly Version 3 83751 23721 8818 14903 Pyrus Pyrus Assembly Version 3 330 271 35 236 Rosa Rosa Assembly Version 3 5284 2963 705 2258
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Rosaceae EST Unigene V2:
The previous version of the unigene is still available for searching and browsing with the following links.
Organism Project EST Number Unigene Number Contig Number Singlet Number Rosaceae Rosaceae Assembly Version 2 259827 72114 10478 61636 Fragaria Fragaria Assembly Version 2 9399 5565 1372 4193 Malus Malus Assembly Version 2 202888 67991 22435 45556 Prunus Prunus Assembly Version 2 41900 12909 5047 7862 Pyrus Pyrus Assembly Version 2 335 271 35 236 Rosa Rosa Assembly Version 2 5305 2963 705 2258
