2018

Yu, M., Jung, S., Cheng, C.-H., Lee, T., Buble, K., Zheng, P., Humann, J., McGaughey, D., Ficklin, S.P., Campbell, B.T., Percy, R.G., Jones, R., Jones, D.C., Main, D. 2018. Using CottonGen for Crop Improvement. Proceedings of the Cotton Beltwide Conference; January 3-5, 2018; San Antonio, USA

Poelchau, M., Campbell, J.D., Cannon, E., Jung, S., Main, D., Walls, R., Harper, L.C. 2018. Challenges and Recommendations for Genomics, Genetics and Breeding Databases from the AgBioData Consortium. Abstracts of the Plant & Animal Genome Conference XXVI; January 13-17, 2018; San Diego, USA

Jung, S., Lee, T., Cheng, C.-H., Gasic, K., Campbell B.T., Main, D. 2018. Using the Tripal Breeding Information Management System (BIMS) to Enable Efficient Management of Phenotypic and Genotypic Data. Abstracts of the Plant & Animal Genome Conference XXVI; January 13-17, 2018; San Diego, USA

Ma, Y., Coyne, C.J., Smitchger, J., McGee, R., Main, D. 2018. Kasp Assays for Powdery Mildew Resistance Breeding in Pea. Abstracts of the Plant & Animal Genome Conference XXVI; January 13-17, 2018; San Diego, USA

Humann, J., Lee, T., Ficklin, S.P., Cheng, C.-H., Hough, H., Jung, S., Wegrzyn, J.L., Neale, D.B., Main, D. 2018. GenSAS v5.1: A Web-Based Platform for Structural and Functional Annotation and Curation of Genomes. Abstracts of the Plant & Animal Genome Conference XXVI; January 13-17, 2018; San Diego, USA

Chen, M., Condon, B., Almseed, A., Yu, J., Wegrzyn, J., Main, D., Ficklin, S.P., Staton, M. 2018. Updates to the Hardwood Genomics Project, a Website and Database for Tree Genetic and Genomic Data. Abstracts of the Plant & Animal Genome Conference XXVI; January 13-17, 2018; San Diego, USA

Main, D., Buble, K., Lee, T., Jung, S., Humann, J., Yu, M., Ficklin, S.P., Gasic, K., Campbell, B.T. 2018. Updates on Tripal Mapviewer and the Tripal Breeding Information Management System (BIMS). Abstracts of the Plant & Animal Genome Conference XXVI; January 13-17, 2018; San Diego, USA

Ficklin, S.P., Cheng, C.-H., Spoor, S., Chen, M., Almsaeed, A., Condon, B., Mills, N., Watts, N., Wytko, C., Grau, E., Herndon, N., Soto, B., Junk, S., Wang, K.-C., Feltus, A., Saton, M., Wegrzyn, J., Main, D. 2018. The​ ​Tripal​ ​Gateway​ ​Project:​ ​Supporting​ ​Exchange,​ ​Transfer​ ​and​ ​Analysis​ ​of​ ​Large-Scale Data​ ​for​ ​Online​ ​Biological​ ​Databases. Abstracts of the Plant & Animal Genome Conference XXVI; January 13-17, 2018; San Diego, USA

Yu, M., Jung, S., Cheng, C.-H., Lee, T., Buble, K., Zheng, P., Humann, J., McGaughey, D., Ficklin, S.P., Campbell, B.T., Percy, R.G., Jones, R., Jones, D.C., Main, D. 2018. C06: CottonGen: An Online Resource for the Cotton Community. Abstracts of the Plant & Animal Genome Conference XXVI; January 13-17, 2018; San Diego, USA

Jung, S., Lee, T., Cheng, C.-H., Zheng, P., Yu, J., Humann, J., Gasic, K., Frank, M., Scott, K., Evans, K.M., Peace, C., Devetter, L., McFerson, J., Kahn, M., Main, D. 2018. Using GDR for Translational Research. Abstracts of the Plant & Animal Genome Conference XXVI; January 13-17, 2018; San Diego, USA

Jung, S., Lee, T., Cheng, C.-H., Ficklin, S.P., Yu, J., Humann, J., Main, D. 2018. Mainlab Chado Module, a Tripal Module for Loading Map, Marker, QTL, Genotype, Phenotype and Germplasm Data. Abstracts of the Plant & Animal Genome Conference XXVI; January 13-17, 2018; San Diego, USA

Buble, K., Jung, S., Humann,. J., Cheng, C.-H., Lee, T., Ficklin, S.P., Yu, J., Main, D. 2018. TripalMap Mapviewer 1.0. Abstracts of the Plant & Animal Genome Conference XXVI; January 13-17, 2018; San Diego, USA

Humann, J., Lee, T., Ficklin, S.P., Cheng, C.-H., Hough, H., Jung, S., Neale, D.B., Main, D. 2018. GenSAS v5.1: A Web-Based Platform for Structural and Functional Genome Annotation and Curation. Abstracts of the Plant & Animal Genome Conference XXVI; January 13-17, 2018; San Diego, USA

Yu, J., Jung, S., Cheng, C.-H., Lee, T., Buble, K., Zheng, P., Humann, J., McGaughey, D., Hough, H., Ficklin, S.P., Campbell, B.T., Percy, R.G., Jones, D.C., Main, D. 2018. CottonGen: An Online Resource for the Cotton Community. Abstracts of the Plant & Animal Genome Conference XXVI; January 13-17, 2018; San Diego, USA

Main, D. Jung, S., Cheng, C.-H., Lee, Yu, J., Hough, H., Frank, M., Scott, K., Buble, K., McGaughey, D., Unda, V., Yu, M., McFerson, J., Peace, C. 2018. NRSP10 Update: Development of Crop Genomics, Genetics and Breeding Database Resources. Abstracts of the Plant & Animal Genome Conference XXVI; January 13-17, 2018; San Diego, USA

Campbell, J.D., Cannon, E., Jung, S., Main, D., Poelchau, M., Walls, R., Harper, L.C. 2018. AgBioData: Identifying and Meeting Common Goals in the Management of Agricultural Biological Data. Abstracts of the Plant & Animal Genome Conference XXVI; January 13-17, 2018; San Diego, USA
 

2017

Main, D., Jung, S., Lee, T., Cheng, C-H., Zheng, P., Humann, J.L., Ru, S., Scott, K., Frank, M., Yu, J., Gasic, K., McFerson, J., Evans, K.M., Peace, C.P., DeVetter, L., Coe, M. and Kahn, M. 2017. GDR: New Data and New Functionality.  Abstracts of the International Plant and Animal Genome Conference XXV; January 14-18, 2017; San Diego, USA

Jung, S., Lee, T., Cheng, C-H., Zheng, P., Humann, J.L., Ru, S., Scott, K., Frank, M., Yu, J., Gasic, K., McFerson, J., Evans, K.M., Peace, C.P., DeVetter, L., Coe, M., Kahn, M and Main, D. 2017. Using GDR: An Overview.  Abstracts of the International Plant and Animal Genome Conference XXV; January 14-18, 2017; San Diego, USA

Jung, S., Lee, T., Cheng, C-H., Zheng, P., Humann, J.L., Ru, S., Scott, K., Frank, M., Yu, J., Gasic, K., McFerson, J., Evans, K.M., Peace, C.P., DeVetter, L., Coe, M., Kahn, M and Main, D. 2017. Newly Designed Genome Database for Rosaceae (GDR).  Abstracts of the International Plant and Animal Genome Conference XXV; January 14-18, 2017; San Diego, USA

Campbell, J.D., Campbell, E., Jung, S., Main, D., Poelchau, M., Walls, R. and Harper, L.S. 2017. AgBioData: A Consortium of Agricultural Biological Databases. Abstracts of the International Plant and Animal Genome Conference XXV; January 14-18, 2017; San Diego, USA

Buble, K., Jung, S., Humann, J.L., Cheng, C-H., Lee, T., Ficklin, S.P., Yu, J. and Main, D. 2017. Development of TripalMap. Abstracts of the International Plant and Animal Genome Conference XXV; January 14-18, 2017; San Diego, USA

Lin, Q., Herndon, N., Grau, E., Ficklin. S.P., Staton, M., Jung, S., Main, D., Feltus, A. and Wegrzyn, J.L. 2017. A Novel Tripal Database Module and Workflow to Facilitate Variant Mapping and Detection in Non-Model Plant Species. Abstracts of the International Plant and Animal Genome Conference XXV; January 14-18, 2017; San Diego, USA

Ficklin, S.P., Cheng, C.H., Watts, N., Chen, M., Wytko, W., Soto, B., Sanderson, L.A., Jung, S., Wang, K-H., Staton, M., Main D., Feltus, A. and Wegrzyn, J.L. 2017. Tripal Introduction and Core Development Efforts. Abstracts of the International Plant and Animal Genome Conference XXV; January 14-18, 2017; San Diego, USA

Yu, J., Jung, S., Cheng, C.H., Lee, T, Zheng, P., Humann, J., McGaughey, D., Frank, M., Hough, H., Campbell, B.T., Percy, R.G., Jones, D.C., Main, D. 2017. CottonGen: An upto-date Resource for Cotton Genomics, Genetics and Breeding Research. Abstracts of the International Plant and Animal Genome Conference XXV; January 14-18, 2017; San Diego, USA

Jung, S., Cheng, C-H., Lee, T., Ficklin, S.P., Yu, J., Humann, J.L. and Main, D. 2017. Mainlab Chado Loader, Chado Data Display and Chado Search for Sequence, Map, Marker, QTL, Genotype, Phenotype and Germplasm Data.  Abstracts of the International Plant and Animal Genome Conference XXV; January 14-18, 2017; San Diego, USA

Gasic, K., Jung, S., Lee, T., Cheng, C-H., Yu, J., Campbell, T., Evans, K.M., Peace, C. and Main, D. (2016). Use of FieldBook and BIMS for Rosaceae Breeding. RosBREED Participants Meeting; March 6-8, 2017; East Lansing, USA

Humann, J.L., Piaskowski, J., Jung, S., Cheng, C-H.,  Lee, L., Frank, M.,  Scott K., Zheng, P., Flores, M.,  Saha, S., Mueller, L.A.,  Gmitter, F.G. jr,  Abbott, A.G., and Main, D. 2017. Resources in the Citrus Genome Database that enable basic, translational, and applied research. 5th International Research Conference on Huanglongbing, Mar. 15-17, 2017, Orlando, FL. Journal of Citrus Pathology, 2017, 4(1):20.

Jung, S., Cheng, C-H., Lee, T., Ficklin, S.P., Yu, J., Humann, J.L. and Main, D. (2017) Development of Database Resources and Tools for Crop Genomics, Genetics and Breeding Research. Abstracts of the International Plant and Animal Genome Asia Conference XXV; May 29-30, 2017; Seoul, South Korea

ung, S., Cheng, C-H., Lee, T., Ficklin, S.P., Yu, J., Humann, J.L. and Main, D. (2017) Development of Database Resources and Tools for Crop Genomics, Genetics and Breeding Research. Abstracts of the 2017 Plant and Breeding Symposium; June 3-4, 2017; Seoul, South Korea

Jung S., Lee, T., Gasic, K., Campbell, B.T., Cheng C-H., Yu, Y., Humann, J.L., Evans, K., Peace, C., and Main, D. 2017. TripalBMS: the Breeding Management System in Tripal for efficient management of private breeding data that are integrated with public genomic and genetic data. 2017. Proceedings of the American Society of Plant Biologist Annual Meeting; June 24-28, 2017; Honolulu, HI

Main, D., Humann, J.L., Lee, T., Ficklin, S.P., Cheng, C-H., Hough, H., Jung, S., Wegrzyn, J.L., and D.B. Neale. 2017. Structural and functional annotation of model and non-model organisms with GenSAS v5.0, a web-based annotation platform. Proceedings of the American Society of Plant Biologist Annual Meeting; June 24-28, 2017; Honolulu, HI

Main, D., Jung, S., Kahn, M., Peace, C., and J. McFerson. 2017. National Research Support Project 10. American Society of Plant Biologist Annual Meeting June 24-28, 2017, Honolulu, Hawaii.

Gasic, K., Jung, S., Lee, T., Cheng, C-H., Zheng, P., Humann, J.L., Ru, S., Scott, K., Frank, M., Yu, J., McFerson, J., Evans, K.M., Peace, C.P., DeVetter, L., Coe, M., Kahn, M. and Main, D., (2017). Peach Resources in the Genome Database for Rosaceae.  Proceedings of the IX International Peach Symposium; July 2-6, 2017; Bucharest, RomaniaJ

Gasic, K., Lee, T., Jung, S., and Main, D. 2017. A Breeders Perspective on Using the Breeding Information Management System for Fruit Breeding. Proceedings of the ASHS Annual Conference; September 19-22, Waikoloa, HI

Jung S., Lee, T., Cheng, C.H., Zheng, P., Humann, J.L., Yu, J., Scott, K., Frank, M., McGaughey, D., Hough, H., Gasic, K., Evans, K., Peace, C., McFerson, J., Coe, M., and Main, D,.  2017. Resources for Breeders in the Genome Database for Rosaceae. . Proceedings of the ASHS Annual Conference; September 19-22, Waikoloa, HI

Bassil, N., Jung, S., Cheng, C-H., Lee, T., Zheng, P., and Main, D.,  2017. NRSP10 Resources for Small Fruit Research. Proceedings of the ASHS Annual Conference; September 19-22, Waikoloa, HI

Humann, J.L., Lee, T., Ficklin, S.P., Cheng, C-H., Hough, H., Jung, S., Wegrzyn, J.L., and D.B. Neale. 2017.  Using Gensas for Specialty Crop Community Genome Annotation. Proceedings of the ASHS Annual Conference; September 19-22, Waikoloa, HI

Humann, J., Piaskowski, J., Jung, S., Cheng, C-H.,  Lee, L., Frank, M.,  Scott K., Zheng, P., Flores, M.,  Saha, S., Mueller, L.A.,  Gmitter, F.G. jr,  Abbott, A.G., and Main, D. 2017. Citrus Genome Database: Resources That Enable Basic, Translational, and Applied Research. Proceedings of the ASHS Annual Conference; September 19-22, Waikoloa, HI

Staton, M., Chen, M., Almsaeed, A., Condon, B., Yu, J., Henry, W., Wegrzyn J.L., Main, D., Ficklin, S.P. 2017. Using Tripal As a Project Database: The Hardwood Genomics Project. Proceedings of the ASHS Annual Conference; September 19-22, Waikoloa, HI

Peace, C., Vanderzande, S., Iezzoni, A., Jung, S., and Main, D. 2017. NRSP10 Resources for Translational Tree Fruit Research.  Proceedings of the ASHS Annual Conference; September 19-22, Waikoloa, HI

Main, D., Jung, S., Kahn, M., Peace, C., and J. McFerson. 2017. What Is NRSP10 and What Can It Do for Specialty Crop Research. Proceedings of the ASHS Annual Conference; September 19-22, Waikoloa, HI

Campbell B.T., Lee, T., Jung, S., Yu, J., Jones, D., and Main, D. 2017. A Breeders Perspective on using the Breeding Information Management System for Cotton Breeding. Proceedings of the 2017 Cotton Breeders Tour, September 24-26, Arizona.

Udall, J., Yu, J., Jung, S., Cheng, C.H., Lee, T, Zheng, P., Humann, J., McGaughey, D., Frank, M., Hough, H., Campbell, B.T., Percy, R.G., Jones, D.C., Main, D. 2017. CottonGen: An An Overview for Breeders. Proceedings of the 2017 Cotton Breeders Tour, September 24-26, Arizona.

2016

Main D, Jung S, Lee T, Cheng C-H, Yu J, Gasic K, Campbell BT, Evans KM, Peace C (2016) TripalBIMS: development of a Breeding Information Management System. Abstracts of Cotton Breeders Workshop, 2016 Cotton Beltwide Conference; January 5-7, 2016; New Orleans, USA.

Yu J, Jung S, Cheng CH, Lee T, Zheng P, Humann JL, McGaughey D, Hough H, Ficklin SP, Campbell BT, Percy RG, Jones DC , Main D (2016) New Breeding Data and Tools in CottonGen: The Community Resource for Cotton Genomics, Genetics and Breeding Researches. Abstracts of the Cotton Improvement Conference, 2016 Cotton Beltwide Conference; January 5-7, 2016; New Orleans, USA.

Main D, Yu J, Jung S, Cheng CH, Lee T, Zheng P, Humann JL, McGaughey D, Hough H, Ficklin SP, Campbell BT, Percy RG, Jones DC (2016) Overview of CottonGen for Breeders. Abstracts of Cotton Breeders Workshop, 2016 Cotton Beltwide Conference; January 5-7, 2016; New Orleans, USA.

Main D, Rife T, Poland JA, Gasic K,  Jung S, Campbell BT, Evans KM (2016) Introduction to Field Book: An Open-source Android App for Collecting Phenotypic Data in a Breeding Programs. Abstracts of Cotton Breeders Workshop, 2016 Cotton Beltwide Conference; January 5-7, 2016; New Orleans, USA.

Humann JL, Jung S, Zheng  , Cheng C-H, Lee T, Frank M, McGaughey D,  Scott K, Yu J, Ficklin SP, Sanad  MNME, Hough H, Coyne C, McGee R, Main D (2016) Cool Season Food Legume Genome Database: An Up-to-Date Resource Enabling Genetics, Genomics and Breeding Research in Pea, Lentil, Faba Bean and Chickpea. Abstracts of the International Plant and Animal Genome Conference XXIV; January 9-13, 2016; San Diego, USA.

Main D, Jung S, Cheng C-H, Lee T, Zheng P , Ficklin SP, Humann JL, Yu J, Blenda A, Scott K, Byrd M, DeVetter L, Peace C, Evans KM, Gasic K, Olmstead M, Coe M, Abbott AG (2016) Genome Database for Rosaceae: Updates and New Directions.  Abstracts of the International Plant and Animal Genome Conference XXIV; January 9-13, 2016; San Diego, USA.

Jung S, Cheng C-H, Lee T, Ficklin SP, Blenda A, Yu J, Scott, K, Byrd M, Ru S, Zheng P, Humann JL, DeVetter L, Peace C, Evans KM, Gasic K, Olmstead M, Coe M, Abbott AG, Main D (2016) GDR, the Genome Database for Rosaceae: New Data and Functionality.  Abstracts of the International Plant and Animal Genome Conference XXIV; January 9-13, 2016; San Diego, USA.

Yu J, Jung S, Cheng CH, Lee T, Buble K, Zheng P, Humann JL, McGaughey D, Hough H, Ficklin SP, Camobell BT, Percy RG, Jones DC, Main D (2016) Updates to CottonGen: The Community Database for Genomics, Genetics and Breeding Research in Cotton.  Abstracts of the International Plant and Animal Genome Conference XXIII; January 10-14, 2015; San Diego, USA.

Humann JL, Jung S, Zheng P , Cheng C-H, Lee T, Frank M, McGaughey D,  Scott K, Yu J, Ficklin SP, Sanad  MNME, Hough H, Coyne C, McGee R, Main D (2016) Cool Season Food Legume Genome Database: An up-to-Date Resource Enabling Genetics, Genomics and Breeding Research in Pea, Lentil, Faba Bean and Chickpea. Abstracts of the International Plant and Animal Genome Conference XXIV; January 9-13, 2016; San Diego, USA.

Bett K, Ramsay L, Chan C, Sharpe AG, Cook DR, Penmetsa RV, Chang P, Coyne CJ, McGee R, Main D, Edwards D, Kaur S, Vandenberg A (2016) Lentil 1.0 and Beyond. Abstracts of the International Plant and Animal Genome Conference XXIII; January 10-14, 2015; San Diego, USA.

Humann JL, Jung S, Zheng P , Cheng C-H, Lee T, Frank M, McGaughey D,  Scott K, Yu J, Ficklin SP, Sanad  MNME, Hough H, Coyne C, McGee R, Main D (2016) Cool Season Food Legume Genome Database: An up-to-Date Resource Enabling Genetics, Genomics and Breeding Research in Pea, Lentil, Faba Bean and Chickpea. Abstracts of the International Plant and Animal Genome Conference XXIV; January 9-13, 2016; San Diego, USA.

Yu J, Jung S, Cheng CH, Lee T, Buble K, Zheng P, Humann JL, McGaughey D, Hough H, Ficklin SP, Camobell BT, Percy RG, Jones DC, Main D (2016) Updates to CottonGen: The Community Database for Genomics, Genetics and Breeding Research in Cotton.  Abstracts of the International Plant and Animal Genome Conference XXIII; January 10-14, 2015; San Diego, USA.

Grau E, Demurijan SA, Vasquez-Gross H, Gessler D, Staton M, Jung S, Feltus A, Main D, Ficklin SP, Neale D, Wegrzyn J (2016) TreeGenes: Enabling Visualization and Analysis in Forest Tree Genomics. Abstracts of the International Plant and Animal Genome Conference XXIV; January 9-13, 2016; San Diego, USA.

Jung S, Lee T, Cheng C-H, Yu J, Gasi K, Campbell BT, Evans KM, Peace C, Main D (2016) TripalBIMS: the Breeding Information Management System in Tripal. Abstracts of the International Plant and Animal Genome Conference XXIV; January 9-13, 2016; San Diego, USA.

Ficklin SP, Sanderson L-A, Cheng C-H, Soto B, Wytko C, Jung S, Feltus A, Bett K, Main D (2016) Deliver Searchable Genomic, Genetic and Related Data Online Using Tripal. Abstracts of the International Plant and Animal Genome Conference XXIV; January 9-13, 2016; San Diego, USA.

Humann JL, Ficklin SP, Lee T, Cheng C-H, Jung S, Wegrzyn J, Neale D, Main D (2016) GenSAS v4.0: An Easy-to-Use, Web-Based Platform for Structural and Functional Genome Annotation and Curation. Abstracts of the International Plant and Animal Genome Conference XXIV; January 9-13, 2016; San Diego, USA.

Reid R, Brown A, Main D, Broewer C, Walstead RN, Chen Y (2016) Blueprints for Blueberry: A Genome Assembly and Annotation. Abstracts of the International Plant and Animal Genome Conference XXIV; January 9-13, 2016; San Diego, USA.

Long-Xi Yu, Zheng P, Ho J, Bhamidimarri S, Main D (2016) A Whole Genome Association Study on Verticillium Wilt Resistance in Heterozygous Autotetraploid Alfalfa (Medicago sativa L.).  Abstracts of the International Plant and Animal Genome Conference XXIV; January 9-13, 2016; San Diego, USA.

Ficklin SP, Sanderson L-A, Cheng C-H, Wytko C, Soto B, Clytus M, Bett K, Main D (2016) The Future of Tripal: intuitive content creation, flexible data storage and web services.  Abstracts of the International Plant and Animal Genome Conference XXIV; January 9-13, 2016; San Diego, USA.

Sanderson L-A, Ficklin SP, Main D,  Bett K  (2016) Tripal v2: An Overview.  Abstracts of the International Plant and Animal Genome Conference XXIV; January 9-13, 2016; San Diego, USA.

Main D, Jung S, Kahn M, Peace C, Mcferson J (2016) Overview of NRSP and Planned Tripal development. Abstracts of the International Plant and Animal Genome Conference XXIV; January 9-13, 2016; San Diego, USA.

Jung S, Lee T, Cheng C-H, Yu J, Gasic K, C Evans KM, Peace C, Main D (2016) Development of TripalBIMS: a Breeding Information Management System in Tripal. RosBREED Participants Meeting; March 7-9, 2016; East Lansing, USA.

Ma Y, Holdsworth B, Cheng P, Mazourek M, Coyne C, Main D, McGee R (2016) Genome-wide SNP identification, linkage map construction and QTL mapping for mineral nutrients. Poster presentation at WSU Academic Showcase, March 25, 2016, Pullman, WA

Ma Y, Holdsworth B, Cheng P, Mazourek M, Coyne C, Main D, McGee R (2016) Genome-wide SNP identification, linkage map construction and QTL mapping for mineral nutrients. Poster presentation at WSU Molecular Plant Sciences Retreat, March 5, 2016, Pullman, WA

Yu J, Jung S, Cheng CH, Lee T, Buble K, Zheng P, Humann JL, McGaughey D, Hough H, Ficklin SP, Campbell BT, Percy RG, Jones DC , Main D (2016) CottonGen: Current Functionality and Future Direction. 2016 World Cotton Research Conference 6 and 2016 ICGI Conference; May 2-6, 2016;. Goiânia, Brazil

Main D, Jung S, Cheng C-H, Lee T, Ficklin SP, Blenda A, Yu J, Scott, K, Byrd M, Ru S, Zheng P, Humann JL, DeVetter L, Peace C, Evans KM, Gasic K, Olmstead M, Coe M, Abbott AG (2016) Introduction to RGC8 GDR Workshop. Abstracts of the 8th International Rosaceae Genomics Conference; June 21-24, 2016; Angers, France.

Jung S, Lee T, Chen C-H, Gasic K, Campbell BT, Evans KM, Peace C, Main D (2016) GDR Breeding Information Management Systems. Abstracts of the 8th International Rosaceae Genomics Conference; June 21-24, 2016; Angers, France.

Gasic K, Rife T, Poland JA, Jung S, Evans KM, Oraguzie N, DeVetter LW, Peace C, Olmstead MA, Main D (2016) Evaluation of Field Book: An Open-source Android App for Collecting Phenotypic Data in a Peach Breeding Program. Abstracts of the 8th International Rosaceae Genomics Conference; June 21-24, 2016; Angers, France.

Main D (2016) Progress in the Genome Database for Rosaceae: Empowering Specialty Crop Research through Big-Data Driven Discovery and Application in Breeding and NRSP 10 Database Resources for Crop Genomics, Genetics and Breeding Research. Presentation to the Specialty Crop Committee Annual Meeting; August 2, 2016, Portland, USA.

Humann JL, Ficklin SP, Lee T, Cheng C-H, Jung S, Wegrzyn J, Neale D, Main D (2016) Gensas v5.0: An Easy-to-use, Web-based Platform for Individual or Collaborative Structural and Functional Genome Annotation and Curation.  Abstracts of the American Society for Horticultural Science Conference; August 7-11, 2016; Atlanta, USA.

Gasic K, Rife T, Poland JA, Jung S, Evans KM, Oraguzie N, DeVetter LW, Peace C, Olmstead MA, Main D (2016) Evaluation of Field Book: An Open-source Android App for Collecting Phenotypic Data in a Peach Breeding Program. Abstracts of the American Society for Horticultural Science Conference; August 7-11, 2016; Atlanta, USA.

Main D,  Jung S, Cheng CH, Lee T, Ficklin SP, Gasic K, Yu J, Humann JL,  Zheng P, Scott K, Evans KM, Peace C, DeVetter L, Oraguzie N, Olmstead M (2016) Genome Database for Rosaceae: A Resource for Genomics, Genetics and Breeding Research. Abstracts of the American Society for Horticultural Science Conference; August 7-11, 2016; Atlanta, USA.

Olmstead M, Iezzoni AF, Peace CP, Bassil N, Coe M, Finn CE, Gasic K, Luby JJ, Main D, McFerson JR, Norelli JL, Whitaker VM, Yue C, Sebolt A (2016) Successful Networking to Create International Collaborations in the Rosaceae Community.   Abstracts of the American Society for Horticultural Science Conference; August 7-11, 2016; Atlanta, USA, USA.

Main D,  Jung S, Cheng CH, Lee T, Ficklin SP, Lee T, Humann JL,  Yu J,  Zheng P, Peace C, Evans KM, Gasic K, Olmstead M, DeVetter LW, Kahn M, Mcferson JR, Abbott A, Bassil N (2016) Resources available for Fragaria research through the Genome Database for Rosaceae. Abstracts of the 8th International Strawberry Symposium; August 13-17, 2016; Quebec, Canada.

McFerson, J., Jung, S., Lee, T., Cheng, C-H., Zheng, P., Humann, J.L., Ru, S., Scott, K., Frank, M., Yu, J., Gasic, K., McFerson, J., Evans, K.M., Peace, C.P., DeVetter, L., Coe, M., Kahn, M. and Main, D. (2017). GDR and Big Data. Oral presentation at the Washington State Tree Fruit Association Annual Meeting; December 4-6, 2017; Pasco, USA

2015

Main D, Jung S, Lee T, Ficklin SP, Cheng CH, Blenda A, Yu J, Zheng P, Humann J, Peace C, Evans K, Oraguzie N, Olmstead M, Gasic K (2015) GDR: Updates and Future Development. WA Apple Genomics, Genetics and Genomics Meeting; Jan 27, 2015; Wenatchee.

Main D, Jung S, Lee T, Ficklin SP, Cheng CH, Blenda A, Yu J, Zheng P, Humann J, Peace C, Evans K, Oraguzie N, Olmstead M, Gasic K (2015) GDR: A Community Database for Rosaceae Genomics, Genetics and Breeding Research. Abstracts of the International Plant and Animal Genome Conference XXIII; January 10-14, 2015; San Diego

Jung S, Yu J, Lee T, Cheng C-H, Ficklin SP, Main D (2015) CottonGen: Converting Legacy Sites to Tripal. Abstracts of International Plant and Animal Genome Conference XXIII; January 10-14, 2015; San Diego

Ficklin SP, Sanderson L-A, Cheng C-H, Jung S, Bett K, Main D (2015) Tripal Overview and Future Developments.  Abstracts of the International Plant and Animal Genome Conference XXIII; January 10-14, 2015; San Diego

Sanderson L-A, Ficklin SP, Main D, Bett K (2015) Extending Tripal for Specialized Display and Management of Diversity and Breeding data.  Abstracts of the International Plant and Animal Genome Conference XXIII; January 10-14, 2015; San Diego

Main D, Ficklin SP, Lee T, Humann JL, Cheng CH, Wegrzyn J, Neale D (2015) GenSAS. Abstracts of the International Plant and Animal Conference XXIII; January 10-14, 2015; San Diego

Ficklin SP, Lee T, Humann JL, Cheng CH, Wegrzyn J, Neale D, Main D (2015) GenSAS: A web-Based Platform for Automated and Manual Curation of Genomic Sequence. Abstracts of the International Plant and Animal Conference XXIII; January 10-14, 2015; San Diego

Jung S, Ficklin SP, Lee T, Cheng CH, Blenda A, Yu J, Zheng P, Ru S, Peace C, Evans KM, Oraguzie N, DeVetter L, Abbott AG, Gasic K, Olmstead M, Main D (2015) How to Use GDR, the Genome Database for Rosaceae.  Abstracts of the International Plant and Animal Genome Conference XXIII; January 10-14, 2015; San Diego

Jung S, Piaskowski J, Ficklin SP, Cheng CH, Zheng P, Olmstead M, Abbott AG, Cedex d'O, Chen C, Mueller L, Gmitter FG, Main D (2015) Citrus Genome DB Updates.  Abstracts of the International Plant and Animal Genome Conference XXIII; January 10-14, 2015; San Diego

Yu J, Jung S, Cheng CH, Ficklin SP, Lee T, Zheng P, Jones DC, Percy RG, Main D (2015) CottonGen: The Community Database for Cotton Genomics, Genetics and Breeding Research.  Abstracts of the International Plant and Animal Genome Conference XXIII; January 10-14, 2015; San Diego

Verde I, Shu S, Jenkins J, Zuccolo A, Dettori MT, Dardick C, Rossini L, Grimwood J, Pirona R, Goodstein DM, Dondini L, Vendramin E, Martinez-Gomez P, Silva H, Micali S, Falchi R, Scalabrin S, Bassi D, Main D, Orellana A, Vizzotto G, Tartarini S, Meisel L, Abbott AG, Morgante M, Rokhsar DS, Schmutz J (2015) The Peach v2.0 Release: An Improved Genome Sequence for Bridging the Gap Between Genomics and Breeding in Prunus. Abstracts of the International Plant and Animal Genome Conference XXIII; January 10-14, 2015; San Diego

 Iezzoni A, Peace C, Bassil N, Coe M, Finn C, Gasic K, Luby JJ, Main D, McFerson J, Norelli JL, Olmstead M, Whitaker VM, Yue C (2015) RosBREED: Combining Disease Resistance with Horticultural Quality in New Rosaceae Cultivars.  Abstracts of the International Plant and Animal Genome Conference XXIII; January 10-14, 2015; San Diego

Paul R, Kuruganti S, Stevens K, Gonzalez-Ibeas D, Martinez-Garcia PJ, Liechty J, Vasquez-Gross H, Grau E, Loopstra C, Zimin A, Holtz-Morris A, Koriabine M, Yorke JA, Crepeau M, Puiu D, Salzberg SL, deJong PJ, Mockaitis K, Main D, Langley CH, Neale D, Wegrzyn J (2015) Genome Annotation and Repeat Sequence Characterization in Sugar Pine (Pinus lambertiana).  Abstracts of the International Plant and Animal Genome Conference XXIII; January 10-14, 2015; San Diego

Bett K, Ramsay L, Chan C, Sharpe AG, Cook DR, Penmetsa RV, Chang P, Coyne CJ, McGee R, Main D, Vandenberg A (2015) Len Gen: The International Lentil Genome Sequencing Project.  Abstracts of the International Plant and Animal Genome Conference XXIII; January 10-14, 2015; San Diego

Wegrzyn J, Stevens K, Paul R, Gonzalez-Ibeas D, Martinez-Garcia PJ, Liechty J, Vasquez-Gross H, Kuruganti S, Grau E, Loopstra C, Zimin A, Yorke JA, Crepeau M, Puiu D, Holt C, Yandell M, Salzberg SL, deJong PJ, Main D, Langley CH, Neale D (2015) Sugar Pine Annotation.  Abstracts of theInternational Plant and Animal Genome Conference XXIII; January 10-14, 2015; San Diego

DeVetter L, Main D, Jung S, Cheng CH, Lee T,  Blenda A, Yu S, Zheng P, Yu J, Ficklin SP, Evans KM, Peace C,  Oraguzie N, Gasic K, Olmstead M (2015) Resources available for Rubus research through the Genome Database for Rosaceae. Abstracts of the XIth International Rubus and Ribes Symposium; Jun 21-24, 2015; Asheville, NC.

Main D, Jung S, Lee T, Ficklin SP, Cheng CH, Blenda A, Yu J, Zheng P, Humann J, Peace C, Evans K, Oraguzie N, Olmstead M, Gasic K (2015) GDR: A Resource for Rosaceae Breeding. Abstracts of the National Association of Plant Breeders Annual Meeting, July 27-30, 2015; Pullman, WA

Grau E, Wytko C, Soto B, Jung S, Wang K, Watts N, Staton M, Main D, Wegrzyn J, Feltus F, Ficklin S (2015) Abstracts of the Galaxy Community Conference; July 6-8, 2015; Norwich, UK.

Main D, Jung S (2015) Introducing NRSP10L Database Infrastructure for Specialty Crops. Abstracts of the American Society for Horticultural Science Conference; August 4-7, 2015; New Orleans

Humann JL, Ficklin SP, Lee T, Cheng C-H, Jung S, Wegrzyn J, Neale D, Main D (2015) GenSAS: An Easy-to-Use, Web-Based Solution for Specialty Crop Genome Annotation. Abstracts of the American Society for Horticultural Science Conference; August 4-7, 2015; New Orleans

Iezzoni I, Peace CP, Bassil N, Coe M, Finn CE, Gasic K, Hokanson SC, Luby JJ, Main D, McFerson JR, Norelli J, Olmstead M, Whitaker VM, Yue C (2015) rosBREED2: More Traits, Additional Crops, Expanded Germplasm, New Science. Abstracts of the American Society for Horticultural Science Conference; August 4-7, 2015; New Orleans

Humann, J, JungS, Zheng P, ChengC-H,  Lee T, Frank M, McGaughey D, Scott K, Yu J, Ficklin SP, Sanad MNME,, Hough H, Coyne C, McGee R, Main D(2015) Cool Season Food Legume Genome Database: An up to date resource enabling genetics, genomics and breeding research in chickpea, faba bean, lentil and pea. Abstracts of the North American Pulse Improvement 2015 Biannual Meeting; November 4-6, 2015; Niagara Falls, Canada

Yu M, Holdsworth W, Cheng P, Grisack MA, Mazourek M, Coyne C, Main D, McGee RJ (2015) Genome-wide SNP identification, linkage map construction and QTL mapping for mineral nutrients in pea. Abstracts of the North American Pulse Improvement 2015 Biannual Meeting; November 4-6, 2015; Niagara Falls, Canada

Main D, Jung S, Ficklin SP, Cheng C-H, Lee T, Zheng P, Humann P, Yu J, Blenda A, Scott K, Byrd M, Hough H, Wasko DeVetter L, Evans K, Peace C, Gasic K, Olmstead M, Cai L, Coe M (2015) Genome Database for Rosaceae – Utilizing Tripal, an Open-Source Database Platform for Genomics, Genetics and Breeding Research. Abstracts of the Crop Science Society of America/American Society of Agronomy/ Soil Society of America Annual Meeting; November 15-18, 2015; Minneapolis.
 

2014

Main D, Jung S, Lee T, Ficklin S, Cheng CH, Blenda A, Yu J, Zheng P, Piaskowski J, Ru S, Peace C, Evans K, Oraguzie N, Olmstead M, Abbott A (2014) GDR: Current functionality and future direction.  Abstracts of 7th International Rosaceae Genomics Conference; June 24-26, 2014; Seattle

Lee T,  Ficklin S, Humann J, Main D (2014) GenSAS v2.0: an easy-to-use, web-based DNA annotation platform. Abstracts of 7th International Rosaceae Genomics Conference; June 24-26, 2014; Seattle

Zhu Y, Zheng P, Shin S, Fazio G, Mazzola M, Main D (2014) Transcriptome profiling on apple root defense responses to infection by Pythium Ultimum. Abstracts of 7th International Rosaceae Genomics Conference; June 24-26, 2014; Seattle

Jung S, Bassett C, Bielenberg D, Cheng CH, Dardick C, Main D, Meisel L, Slovin J, Troggio M, Schaffer R (2014) A proposed naming convention for genes in Rosaceae species. Abstracts of 7th International Rosaceae Genomics Conference; June 24-26, 2014; Seattle

Bassil N, Davis T, Amaya I, Bellon L, Bianco L, Brew F, Denoyes B, van Dijk T, Ficklin S, Iezzoni A, Jung S, Mahoney L, Main D, Mittman M, Monfort A, Peace C, Pirani A, Rosyara U, Sargent D, Verma S, Webster T, Wood D, Yang Y, Zhang H, Whitaker V, Van De Weg E (2014) First Evaluation of the IStraw90Axiom Array in the Cultivated Strawberry (Fragaria x ananassa).  Abstracts of 7th International Rosaceae Genomics Conference; June 24-26, 2014; Seattle

Johnson F, Zheng P, Main D, Rudell D, Evans K, Zhu Y (2014) Profiling the transcriptomic and metabolomic changes associated with the apple fruit controlled-atmosphere storage related peel disorder.  Abstracts of 7th International Rosaceae Genomics Conference; June 24-26, 2014; Seattle

Peace C, Jung S, Lee T, Ru S, Fazio G, Main D (2014) Cross Assist: Online software to identify efficient cross combinations, integrating rosaceous crop genomics, genetics, and breeding.  Abstracts of 7th International Rosaceae Genomics Conference; June 24-26, 2014; Seattle

Ru S, Edge-Garza D, Harshman J, Evans K, Jung S, Main D, Peace C (2014) Seedling Select: A web-based software tool to facilitate cost modeling of marker-assisted seedling selection (MASS) in Rosaceae tree fruit. Abstracts of 7th International Rosaceae Genomics Conference; June 24-26, 2014; Seattle

Main D (2014) Database Resources for Crop Genomics, Genetics and Breeding Research. 2014. AES Directors from the North Central and the North East region Summer Meeting; July 14, 2014.

Main D (2014) Database Resources for Crop Genomics, Genetics and Breeding Research. 2014. National Plant Germplasm Committee Meeting; June 10, 2014; Beltsville, MD.

Main D (2014) Database Resources for Crop Genomics, Genetics and Breeding Research. 2014. WAAESD Spring Meeting; April 10, 2014; San Diego.

Main D (2014) Database Resources for Crop Genomics, Genetics and Breeding Research. 2014. SAAESD Spring Meeting; March 10, 2014; Savannah, GA.

Langley CH, Wergrzyn JL, Stevens K, Zimin A, Puiu D, Crepeau M, Cardeno C, Koriabine M, Holtz-Morris A, Liechty J, Martinez-Garcia PJ, Vasquez-Gross H, Lin BY, Zeive LL, Dougherty M, Wu L, Gilbert D, Marcias G, Roberts M, Holt C, Yandell M, Davis JM, Smith K, Dean JFD, Lorenz WW, Whetten RW, Sederoff R, Wheeler N, McGuire P, Main D, Mockaitis K, Loopstra C, deJong PJ, Yorke JA, Salzberg SL, Neale D (2014) Loblolly Pine Genome v1.0. Abstracts of International Plant and Animal Genome Conference XXII; January 11-15, 2014; San Diego

Bassil N, Davis T, Amaya I, Bellon LR, Brew F, Denoyes B,  Dijk TV, Ficklin S, Iezzoni A, Jung S, Mahoney LL, Main D, Mittmann M, Monfort A, Peace C, Pirani A, Rosyara U, Sargent DJ, Webster TA, Wood DJ, Yang Y, Zhang H, Van de Weg WE (2014) Development and Preliminary Evaluation of the IStraw90 Axiom Array in the Cultivated Strawberry (Fragaria xananassa). Abstracts of International Plant and Animal Genome Conference XXII; January 11-15, 2014; San Diego

Wegrzyn J, Liechty J, Stevens K, Loopstra C, Vasquez-Gross H, Lin B, Dougherty M, Zieve J, Martinez-Garcia PJ, Holt C, Yandell M, Zimin A, Yorke JA, Crepeau M, Puiu D, Salzberg SL, deJong PJ, Mockaitis K, Main D, Langley C, Neale D (2014) Annotation of the Loblolly Pine Magagenome. Abstracts of International Plant and Animal Genome Conference XXII; January 11-15, 2014; San Diego

Wegrzyn J, Liechty J, Stevens K, Loopstra C, Vasquez-Gross H, Lin B, Zieve J, Martinez-Garcia PJ, Holt C, Yandell M, Zimin A, Yorke JA, Crepeau M, Puiu D, Salzberg SL, deJong PJ, Mockaitis K, Main D, Langley C, Neale D (2014) Introns, Ancient Transposable Elements and Gene Families Revealed in the Annotation of the Loblolly Pine (Pinus teada L.) Magagenome. Abstracts of International Plant and Animal Genome Conference XXII; January 11-15, 2014; San Diego 

Jung S, Ficklin SP, Lee T, Cheng CH, Blenda A, Zheng P, Yu J, Ru S, Evans KM, Peace C, Abbott AG, Mueller L, Olmstead M, Main D (2014) GDR, the Genome Database for Rosaceae, in Chado and Tripal.  Abstracts of International Plant and Animal Genome Conference XXII; January 11-15, 2014; San Diego

Main D, Cheng CH, Ficklin SP, Sanad M, Jung S, Lee T, Zheng P, Coyne C, McGee R, Mockaitis K (2014) The Cool Season Food Legume Database: An Integrated Resource for Basic, Translational and Applied Research.  Abstracts of International Plant and Animal Genome Conference XXII; January 11-15, 2014; San Diego

Yu J, Jung S, Cheng CH, Ficklin SP, Lee T, Zheng P, Jones DC, Percy RG, Main D (2014) Updates in CottonGen: An Integrated Genomics, Genetics and Breeding Database for the Cotton Research Community. Abstracts of International Plant and Animal Genome Conference XXII; January 11-15, 2014; San Diego

Jung S, Lee T, Ficklin SP, Evans KM, Peace C, Main D (2014) Building a Breeding Database in GDR, Genome Database for Rosaceae.  Abstracts of International Plant and Animal Genome Conference XXII; January 11-15, 2014; San Diego

Chen C, Jung S, Main D (2014) Expressed Haplotypes and Polymorphisms in Prunus Species.  International Plant and Animal Genome Conference XXII; January 11-15, 2014; San Diego

Main D (2014) Tree Fruit Genome Database Resources for Basic to Applied Research.  Abstracts of International Plant and Animal Genome Conference XXII; January 11-15, 2014; San Diego

Ru S, Peace C, Evans K, Carter P, Jung S, Harshman J, Edge-Garza D, Main D (2014) Seedling Select: a web-based software tool to facilitate cost modeling of marker-assisted seedling selection (MASS) in Rosaceae tree fruit. Poster presentation at 2014 WSU Academic Showcase, March 25, Pullman, WA.

Ru S, Peace C, Evans K, Carter P, Jung S, Harshman J, Edge-Garza D, Main D (2014) Seedling Select: a web-based software tool to facilitate cost modeling of marker-assisted seedling selection (MASS) in Rosaceae tree fruit. Poster presentation at 2014 WSU Molecular Plant Sciences Retreat, March 1, Pullman, WA.
 

2013

Main D., S. Jung, T. Lee, S. Ficklin, P. Zheng, C. Cheng, S. Ru, A. Blenda, L. Mueller, D. Layne, M. Olmstead, C. Peace, K. Evans, N. Oraguzie, F. Gmitter, A. Abbott (2013) Genome Database for Rosaceae. International Plant and Animal Genome Conference XXI; January 12-16, 2013; San Diego, CA.

Yu J., S. Jung, C. Cheng, S. Ficklin, T. Lee, P. Zheng, D. Jones, R. Percy, D. Main (2013) CottonGen: An Integrated Web-Database for Cotton Genomics, Genetics and Breeding Research. International Plant and Animal Genome Conference XX; January 13-16, 2014; San Diego.

Main D., C. Coyne, T. Lee, P. Zheng, R. McGee, S. Jung, C. Cheng (2013) Updates to the Cool Season Food legume Database: a Genomics, Genetics and Breeding Resource for Chickpea, Lentil and Pea Crop Research. North American Pulse Improvement Association 2013 Biennial Meeting; October 30 - November 1; Portland.

Jung S., T. Lee, S. Ficklin, C. Cheng, A. Blenda, S. Ru, P. Zheng, K. Evans, C. Ross, N. Oraguzie, A. Abbott, D. Layne, M. Olmstead, F. Gmitter, C. Chen, L. Mueller, D. Main (2013) Building database resources for translational research in Rosaceae. ASHS; July 22-25 2013; Palm Desert, CA.

Jung S., T. Lee, S. Ficklin, C. Cheng, P. Zheng, A. Blenda, S. Ru, K. Evans, C. Peace, N. Oraguzie, A. Abbott, M. Olmstead, F. Gmitter, C. Chen, L. Mueller, D. Main (2013) New data and functionality of GDR, the Genome Database for Rosaceae. International Plant and Animal Genome Conference XXI; January 12-16, 2013; San Diego, CA.

Main D., S. Jung, S. Ficklin, P. Zheng, C. Cheng, M. Olmstead, A. Abbott, A. Blenda, C. Chen, L. Mueller, F. Gmitter. Citrus Genome Database: Updates and New Functionality. 2013. International Plant and Animal Genome Conference XXI; January 13-16, 2013; San Diego.

Main D., C. Cheng, S. Ficklin, S. Jung, P. Zheng, C. Coyne, R. McGee, K. Mockaitis (2013) The Cool Season Food Legume Database: An Integrated Resource for Basic, Translational and Applied Research. International Plant and Animal Genome Conference XXI; January 13-16, 2013; San Diego, U.S..

Main D., J. Yu, S. Jung, C. Cheng, S. Ficklin, P. Zheng, D. Jones, R. Percy (2013) Update on CottonGen: An integrated Genomics, Genetics and Breeding Database for the Cotton Research Community. International Plant and Animal Genome Conference XXI; January 13-16, 2013; San Diego, CA.

Jung S., T. Lee, S. Ru, D. Main, A. Iezzoni, C. Peace, G. Fazio (2013) The RosBREED Pedigree-Based Breeding Information Management System. International Plant and Animal Genome Conference XXI; January 12-16, 2013; San Diego, CA.

Montamayor J.C., K. Mockaitis, J. Schmutz, D. Livingstone, O. Cornejo, S. Findley, P. Zheng, P. Utro, S. Royaert, C. Saski, J. Jenkins, R. Podicheti, M. Zhao, B. Scheffler, A. Feltus, F. Amores, W. Phillips, J. P Marelli, G. May, H. Shapiro, Y. Ma, C. Bustamante, R. Schnell, D. Main, D. Gilbert, L. Parida, D. Kuhn (2013) The Genome Of The Most Widely Cultivated Cacao Type and Its Use To Identify Candidate Genes Regulating Traits: Pod Color As An Example. International Plant and Animal Genome Conference XXI; January 13-16, 2013; San Diego, CA.

Kuhn D., J. Ma, P. Zheng, D. Main, N. Haiminen, L. Parida, O. Cornejo, S. Findley, D. Livingstone, G. Mustiga, R. Schnell, K. Mockaitis, J. C Montamayor (2013) Genome Size Evolution in Theobroma cacao: Recent Sequencing of Two Cacao Genomes of Different Size. International Plant and Animal Genome Conference XXI; January 13-16, 2013; San Diego, CA.

Bassil N., I. Amaya, F. Bellon, T. Davis, B. Denoyes-Rothan, T. Van Dijk, S. Ficklin, A. Iezzoni, S. Jung, L. Mahoney, D. Main, M. Mittman, A. Monfort, C. Peace, A. Pirani, D. Sargent, T. Webster, D. Wood, Y. Yang, H. Zhang, E. van de Weg (2013) Development and preliminary evaluation of the IStraw90 Axiom® array in cultivated strawberry (Fragaria xananassa). ASHS; January 12-16, 2013; Palm Desert, CA.

Peace C., N. Bassil, M. Coe, G. Fazio, R. Gallardo, K. Gasic, J. Luby, D. Main, J. McFerson, C. Weebadde, E. van de Weg, C. Yue, A. Iezzoni (2013) Marker-assisted breeding in apple, peach, and cherry targets valuable functional alleles. Jan 12. International Plant and Animal Genome Conference XXI; January 12-16, 2013; San Diego, CA.

van de Weg E., N. Bassil, T. Davis, H. Zhang, L. Mahoney, S. Ficklin, D. Main, S. Jung, C. Peace, A. Monfort, I. Amaya, F. Bellon, B. Denoyes-Rothan, A. Iezzoni, M. Mittman, A. Pirani, T. Webster, F. Brew, M. Troggio, R. Velasco, F. Laurens, R. Crowhurst (2013) Evaluation and design of the strawberry and apple chips. Jan 12. International Plant and Animal Genome Conference XXI; January 12-16, 2013; San Diego, CA.

Main D., T. Lee, P. Zheng, S. Jung, S. Ficklin, J. Humann, J. Wegrzyn, D. Neale (2013) GenSAS: Genome Sequence Annotation Server, a Tool for Online Annotation and Curation. International Plant and Animal Genome Conference XXI; January 13-16, 2013; San Diego.

Yu J., S. Jung, C. Cheng, S. Ficklin, T. Lee, P. Zheng, D. Jones, R. Percy, D. Main (2013) CottonGen: An Integrated Web-Database for Cotton Genomics, Genetics and Breeding Research. International Plant and Animal Genome Conference XXI; January 13-16, 2013; San Diego, CA.

Ru S., D. Edge-Garza, C. Peace, K. Evans, P. Carter, S. Jung, D. Main. Blueprint for RosMASS: A Web-based Rosaceae marker-assisted seedling selection decision support tool. 2013. International Plant and Animal Genome Conference XXI; January 13-16, 2013; San Diego, CA.

Ru S., D. Edge-Garza, D. Main, C. Peace (2013) Blueprint for Seedling Select: A web-based Rosaceae marker-assisted seedling selection decision support tool. WSU Academic Showcase; March 29, 2013; Pullman, WA.


2012

Jung S., A. Cestaro, M. Troggio, D. Main, P. Zheng, I. Cho, K. Folta, B. Sosinski, A. Abbott, J. Celton, P. Arus, V. Shulaev, I. Verde, M. Morgante, D. Rokhsar, R. Velasco, D. Sargent (2012) Whole Genome Comparisons of Fragaria, Prunus and Malus Reveal Different Modes of Evolution Between Rosaceous Subfamilies. Plant and Animal Genome XX; Jan 14-18, 2012; San Diego, CA.

Yu J., S. Jung, C. Cheng, S. Ficklin, T. Lee, P. Zheng, D. Jones, R. Percy, D. Main (2012)CottonGen: Development of an integrated Genomics, Genetics and Breeding Database for the Cotton Research Community. National Cotton Council Beltwide Cotton Conference; January 3-6; Orlando, FL, USA.

Jung S., T. Lee, S. Ficklin, C. Cheng, I. Cho, P. Zheng, K. Evans, C. Peace, N. Oraguzie, A. Abbott, D. Layne, M. Olmstead, FG. Gmitter jr, C. Chen, L. Mueller, D. Main (2012) Updates in GDR, the Genome Database for Rosaceae. International Plant and Animal Genome Conference; Jan 14-18, 2012; San Diego, CA.

Main D., S. Jung, C. Cheng, S. Ficklin, P. Zheng, D. Jones, R. Percy (2012). CottonGen: An integrated Genomics, Genetics and Breeding Database for the Cotton Research Community. The International Cotton Genome Initiative; October 9-12; Raleigh, NC, USA.

Zheng P., T. Lee, S. Ficklin, S. Jung, E. Bodah, D. Kuhn, D. Livingstone III, K. Mockaitis, D. Gilbert, R. Schnell, D. Main, J. Motamayor (2012) Cacao Genome Database. International Plant and Animal Genome Conference; Jan 14-18, 2012; San Diego, CA.

Main D. Online Database Resources for Genomics, Genetics and Breeding Research in Fruit and Nut Crops. 2012. International Plant and Animal Genome; January 14-18; San Diego, USA.

Main D., P. Zheng, S. Ficklin, T. Lee, S. Jung, F. Gmitter, C. Chunxian, A. Abbott, L. Mueller (2012) The Citrus Genome Database: A Community Resource for Citrus Research. Plant and Animal Genome XX; Jan 14-18, 2012; San Diego, CA.

McGee R., C. Cheng, K. Mockaitis, C. Coyne, S. Jung, P. Zheng, G. Timmerman-Vaughan, E. Bodah, M. Grusack, J. Hu, G. Vandermark, W. Chen, K. McPhee, N. Weeden, L. Porter, D. Main (2012) Genomics-assisted breeding for cool season food legumes: from gene discovery to application. International Plant and Animal Genome Conference; Jan 14-18; San Diego.

Ficklin S., L. Sanderson, C. Cheng, M. Staton, S. Jung, T. Lee, I. Cho, K. Bett, D. Main (2012) Tripal: a Toolkit for Construction of Genomic and Genetic Websites Using Chado and Drupal. International Plant and Animal Genome Conference; Jan 14-18, 2012; San Diego, CA.Yu J., R. Kohel, L. Hinze, J. Yu, J. Frelichowski, S. Ficklin, D. Main, R. Percy (2012) CottonDB. International Plant and Animal Genome Conference; Jan 14-18, 2012; San Diego, CA.

Bassil N., I. Amaya, F. Bellon, M. Mittman, A. Pirani, T. Webster, F. Brew, T. Davis, L. Mahoney, D. Wood, Y. Yang, H. Zhang, B. Denoyes-Rothan, T. Van Dijk, S. Ficklin, S. Jung, D. Main, C. Peace, A. Iezzoni, A. Monfort, D. Sargent, E. van de Weg (2012) Towards a large sized Axiom SNP array for allo-octoploid strawberry. 6th Rosaceous Genomics Conference; 30 Sep - 4 Oct; Mezzocorona, Italy.

Jung S., T. Lee, K. Evans, C. Peace, G. Fazio, S. Ru, A. Iezzoni, D. Main (2012) Data overload -- Breeding decision-support software to the rescue! Presentation series -- RosBREED: Discoveries and Breeding Databases for the Fruit Research Community. American Society for Horticultural Science annual conference; July 29-Aug 2; Miami, FL.

Jung S., T. Lee, C. Cheng, P. Zheng, A. Blenda, S. Ru, K. Evans, C. Peace, N. Oraguzie, A. Abbott, D. Layne, M. Olmstead, F. Gmitter, C. Chen, L. Mueller, D. Main (2012) Ten years of GDR: Current resources and functionality of the GDR.  6th Rosaceous Genomics Conference; Mezzocorona, Italy.

Peace C., N. Bassil, M. Coe, G. Fazio, J. Luby, D. Main, J. McFerson, C. Weebadde, E. van de Weg, C. Yue, A. Iezzoni (2012). RosBREED: Enabling marker-assisted breeding in Rosaceae. FruitBreedomics 1st Annual Meeting; Feb; Prague, Czech Republic.

Peace C., N. Bassil, M. Coe, G. Fazio, J. Luby, D. Main, J. McFerson, C. Weebadde, E. van de Weg, C. Yue, A. Iezzoni (2012) RosBREED: Enabling marker-assisted breeding in Rosaceae”. 2nd International Symposium on Biotechnology of Fruit Species; Mar; Nelson, New Zealand.

Peace C., A. Iezzoni, N. Bassil, M. Coe, G. Fazio, R. Gallardo, K. Gasic, J. Luby, D. Main, J. McFerson, C. Weebadde, E. van de Weg, C. Yue (2012). Successful DNA-informed breeding for tree fruit: The RosBREED experience. Colloquium on Breeding in a Genomics Era: State of the Art and New Opportunities. American Society for Horticultural Science annual conference; Aug; Miami, FL.

Iezzoni A., C. Peace, N. Bassil, M. Coe, G. Fazio, R. Gallardo, J. Luby, D. Main, J. McFerson, E. van de Weg, C. Weebadde, C. Yue (2012) RosBREED Mission – Jewels in the Genome. Presentation series -- RosBREED: Discoveries and Breeding Databases for the Fruit Research Community. American Society for Horticultural Science annual conference; Aug; Miami, FL.

Luby J., C. Peace, K. Gasic, C. Finn, N. Oraguzie, S. Brown, D. Byrne, J. Clark, T. Davis, K. Evans, T. Gradziel, J. Hancock, P. Stewart, V. Whitaker, N. Bassil, D. Main, G. Fazio, C. Weebadde, E. van de Weg, M. Bink, A. Iezzoni (2012). RosBREED’s breeding germplasm used for validation of promising trait loci. Presentation series -- RosBREED: Discoveries and Breeding Databases for the Fruit Research Community. American Society for Horticultural Science annual conference; July 29-Aug 2; Miami, FL.

Yu J., S. Jung, C. Cheng, S. Ficklin, T. Lee, P. Zheng, D. Jones, R. Percy, D. Main (2012) CottonGen: Developing an Integrated Genomics, Genetics and Breeding Database for Cotton Research. International Plant and Animal Genome Conference; January 14-18, 2012; San Diego, CA.

Johnson F., Y. Zhu, K. Evans, D. Main, G. Hoogenboom, D. Rudell (2012) Understanding the physiological development and transcriptome changes associated with CO2-injury in apple. Washington State Horticultural Show; Dec 2-5, 2012; Yakima.

Iezzoni A., C. Peace, N. Bassil , M. Coe, G. Fazio, R. Gallardo, K. Gasic, J. Luby, D. Main, J. McFerson, E. Van de Weg, C. Weebadde, C. Yue (2012) RosBREED #2: Extending marker-assisted breeding capability to a wider range of rosaceous crops, traits, and germplasm. Poster presentation. 6th Rosaceous Genomics Conference; September 30-October 4; Trento, Italy.

Oraguzie N., A. Dhingra, C. Peace, M. Whiting, D. Main, T. Einhorn, I. Hanrahan, L. Long, T. Auvil, J. McFerson, F. Bliss, A. Iezzoni (2012) Breeding and genetics program for the PNW. WTFRC NW Cherry Review; Nov 12-13, 2012; Yakima, WA.

Schmitz C.., M. Clark, Y. Guan, B. Orcheski, J. Luby, K. Evans, S. Brown, C. Peace, E. van de Weg, D. Main, A. Iezzoni (2012) Fruit texture trait phenotypes of the RosBREED apple reference germplasm set database. 2012. American Society for Horticultural Science annual conference; Jul 29- Aug 2; Miami, FL.

Clark M.., C. Schmitz, Y. Guan, B. Orcheski, J. Luby, K. Evans, S. Brown, C. Peace, E. van de Weg, D. Main, A. Iezzoni (2012) Fruit trait phenotypic dataset for RosBREED apple reference germplasm set. American Society for Horticultural Science annual conference; Jul 29- Aug 2; Miami, FL.