Wegrzyn, J.L., Staton, M.A., Street, N., Main, D., Grau, E., Herndon, N.,  Buehler, S., Falk, T., Zaman, S., Ramnath, R., Richter, P., Sun, L., Condon, B., Almsaeed, A., Chen, M.,  Mannapperuma C., Jung, S., Ficklin, S. (2019). Cyberinfrastructure to improve forest health and productivity: the role of tree databases in connecting genomes, phenomes, and the environment. Frontiers in Plant Science, 10, 813.

Crocker, E., Condon, B., Almsaeed, A., Jarret, B., Nelson, C. D., Main, D., Abbott, A.G., Staton, M. (2019). TreeSnap: A citizen science app connecting tree enthusiasts and forest scientists. Plants, People, Planet, 00:1–6. 

Human, J.L, Lee, T., Ficklin S., Main., D. (2019). Structural and Functional Annotation of Eukaryotic Genomes with GenSAS. Methods in Molecular Biology. 1962:29-51.

Jung, S., Lee, T., Chung, C-H., Buble, K., Zheng, P., Yu, J., Humann, J., Ficklin S.P., Gasic, K., Scott, K., Frank, M., Ru, S., Hough, H., Evans, K., Peace, C., Olmstead, M., DeVetter, L.W., McFerson, J., Coe, M., Wegrzyn, J.L., Staton, M.E., Abbott, A.G., Main, D. (2018) 15 years of GDR: New data and functionality in the Genome Database for Rosaceae. Nucleic Acids Research, 41(D1):1137-1145

Harper, L., Campbell, J., Cannon, E. K. S., Jung, S., Poelchau, M., Walls, R., Andorf, C., Arnaud, E., Berardini, T.Z., Birkett, C., Cannon, S., Carson, J., Bondon, B., Cooper, L., Dunn, N., Elsik, C.G., Farmer, A., Ficklin, S. P., Grant, D., Grau, E., Herndon, N., Hu, Z-L., Humann, J., Jaiswal, P., Jonquet, C., Laporte, M-A., Larmande, P., Lazo, G., McCarthy, F., Menda, N., Mungall, C. J., Munoz-Torres, M. C., Naithani, S., Nelson, R., Nesdill, D., Park, C., Reecy, J., Reiser, L., Sanderson, L-A., Sen, T. Z., Staton, M., Subramaniam, S., Tello-Ruiz, M.K., Unda, V., Unni, D., Wang, L., Ware, D., Wegrzyn, J., Williams, J., Woodhouse, M., Yu, J., Main, D. (2018). AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. Database, bay088.

Jung, S., Lee, T., Cheng, CH., Humann, J., Yu, J., Ficklin, S.P. and Main, D. (2017). Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databases. Database (Oxford) bax092

Iezzoni A., Peace, C., Main, D., Bassil, N., Coe, M., Finn, C., Gasic, K., Luby, J., Hokanson, S., McFerson, J., Norelli, J., Olmstead, M., Whitaker, V., Yue, C. (2017). RosBREED 2: Progress and future plans to enable DNA-informed breeding in the Rosaceae. Acta Hortic.2017.1172.20.

Gasic, K., Jung, S., Cheng, C.H., Lee, T., Zheng, P., Yu, J., Humann, J., Evans, K., Peace, C., DeVetter, L., Mcferson, J., Coe, M.I. and Main, D. (2017). Resources in the Genome Database for Rosaceae for Peach Research. Acta Horticulturae (in press).

Ma, Y., Coyne, C.J., Main, D. et al. (2017) Development and validation of breeder-friendly KASPar markers for er1, a powdery mildew resistance gene in pea (Pisum sativum L.). Molecular Breeding 37: 151. 

Ma Y, Coyne CJ, Grusack M, Mazourek M, Cheng P, Main D, McGee R. (2017) Genome-wide SNP identification, linkage map construction and QTL mapping for seed mineral concentrations and contents in pea (Pisum sativum L.) BMC Plant Biology  17 (1), 43