Ma Y, Coyne CJ, Grusack M, Mazourek M, Cheng P, Main D, McGee R. (2017) Genome-wide SNP identification, linkage map construction and QTL mapping for seed mineral concentrations and contents in pea (Pisum sativum L.) BMC Plant Biology  17 (1), 43

Yu, L.X., Zheng, P., Zhang, T., Rodringuez, J., Main, D. (2017) Genotyping‐by‐sequencing‐based genome‐wide association studies on Verticillium wilt resistance in autotetraploid alfalfa (Medicago sativa L.). Molecular Plant Pathology 18 (2), 187-194.

Jung S, Lee T, Yu J Ficklin SP, Main D (2016) Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado. Database (Oxford) baw010  

Shin SS, Zheng P, Fazio G, Mazzola M, Main D, Zhu Y (2016) Transcriptome changes specifically associated with apple (Malus domestica) root defense response during Pythium ultimum infection. Physiological and Molecular Plant Pathology 94:16-26

Ru,. S, Hardner, C., Carter, P., Evans, K., Main, D., Peace, C. (2016) Modeling of genetic gain from marker-assisted seedling selection in clonally propagated crops. Horticulture Research (Online) 3, 16015

Xu, J., Yu. J., Kohel, R., Percy, R., Beavis, W., Main, D., Yu, J. 2015. Distribution and evolution of cotton fiber development genes in the fibreless G. raimondii genome. Genomics 106:61-69.

Ru S, Main D, Evans K, Peace C. 2015. Current applications, challenges, and perspectives of marker-assisted seedling selection in Rosaceae tree fruit breeding. Tree Genetics and Genomes 11:8.

Bassil, N.,  Davis, T., Zhang, H., Ficklin, S., Mittmann, M., Webster, T., Mahoney, L.,  Wood, D., Alperin, E., Rosyara, U., Koehorst-van Putten, H., Monford, A., Amaya, I., Denoyes, B., Sargent, D.,  Bianco, L.,  van Dijk, T., Pirani, A., Iezzoni, A., Main, D., Peace, C., Yang, Y., Whitaker, V., Verma, S., Bellon, L., Brew, F., Herrera, R., van de Weg, E. 2015. Development and Preliminary Evaluation of a 90K Axiom SNP Array for the Allo-octoploid Cultivated Strawberry Fragaria x ananassa. BMC Genomics 16:155.

Chen C, Bock, CH, Gmitter Jr FG, Okie WR, Jung S, Main D, Beckman TC, Wood BW. 2014. Genome-wide characterization and selection of expressed sequence tag simple sequence repeat primers for optimized marker distribution and reliability in peach. Tree Genetics and Genomes 10(5) 1271-1279.

Wegrzyn J, Liechty J, Stevens K, Wu L, Loopstra C, Vasquez-Gross H, Dougherty W, Lin B, Zieve J, Martínez-García P, Holt C, Yandell M, Zimin A, Yorke J, Crepeau M, Puiu D, Salzberg S, de Jong P, Mockaitis K, Main D, Langley C, Neale D. 2014. Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation. Genetics 196(3): 891–909.